The Medical University of Plovdiv was established as a medical faculty of Plovdiv University in 1945. In 1950 the faculty became the independent Medical Academy – Plovdiv. It was renamed in 1972 to Higher Medical Institute – Plovdiv. The Faculty of Dental Medicine was established in 1974, while a Medical College was created in 1997 as a subsidiary of the Medical University of Plovdiv. The Higher Medical Institute was renamed to Medical University of Plovdiv in 2002 after a decision by Bulgaria's National Assembly.
A new building was constructed in 2005, where the Faculty of Dental Medicine is located. The new building has a floor area of 14,770 m2 and houses 27 clinical educational rooms, eight seminar rooms, and two auditoriums with a total of 273 places. An auditorium complex with floor area of 2750 m2 was built in 2011 for a total of 5,5 million euro. The new building has six conference rooms and has been nominated for Bulgarian Building of the year in the category of Culture in 2011. Especially with the improvement of the university's infrastructure and the introduction of many new programs taught in English. Moreover, foreign students may get enrolled to language courses and study in Bulgarian (which is taught for one year). In 2013 the prize for the Best Foreign Student in Bulgaria was awarded to a student from the Medical University of Plovdiv. Another new building has been constructed in 2017, it includes many offices as well as a new bookstore.
In 2013 the university was awarded the prize for "Best University" for its leading position in the field of education. The prize was awarded by the European Business Assembly (EBA) at Oxford Summit of Leaders "Science and Education" conference in Oxford, United Kingdom. On 24 July 2017 the Times newspaper exposed that awards from the EBA are fictitious with fees of up to £9300 being paid to the EBA from awards winners. In July 2015 university management acknowledged corruption in the university examination system with payment for passing exams being an ongoing issue in the university. In March 2020 a British citizen and international student of the university was arrested for spreading a false allegation that 200 students of the university had tested positive for COVID-19 and that this was being concealed by the university management. In October 2020 the university management was criticised by president of CITUB Plamen Dimitrov for the low salaries offered to university staff. In October 2020 it was reported that the university has awarded a master's degree in public health and health management in 2010 to Desislava Yordanova despite her not successfully completing a bachelor's degree and as such being ineligible for this master's degree programme.
The university student hostels (over 1500 beds) provide accomodation to students in double and en suite rooms, comfortably furnished, with web access. There are several canteens on the University campus, in the Faculty of Dental Medicine and in the student hostels.
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